Function reference • C3NA

C3NA Workflow
`validatePhloseq()`	Verify Phyloseq Objects before Running the C3NA Pipeline
`initiateC3NA()`	Initiate the C3NA object with Correlation Calculation and Topology Overlap Matrix
`initiateC3NA_DiffCorr()`	Incoporate the C3NA object with Different Correlation Methods
`getOptMods()`	Obtain the Module Information from Consensus-Based Investigation
`comparePhenotypes()`	Obtain the Module Information from Consensus-Based Investigation
`getInfluentialTaxa()`	Adding Influential Taxa Evaluation to the C3NA Object
`addDAResults()`	Adding Differential Abundancce Results to C3NA Object
`extractResults()`	Extract C3NA Results
Shiny Applications
`moduleEvals()`	Shiny Application for Optimal Module Evaluations
`compareTwoPhenoShiny()`	Shiny Application for C3NAobj Comparison
Miscellaneous
`CRC_Phyloseq`	A Phyloseq Object of Colorectal Cancer 16S rRNA Data
`C3NAPackageCheck()`	C3NA Required Package Check
`getStackedTaxaMatrix()`	Obtained the stacked-taxa table

Reference